TFs
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Created on Saturday, 11 October 2014 08:15
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Last Updated on Sunday, 20 September 2015 14:06
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Transcription Factor Gene Family
Plant growth, development and yield are influenced greatly by numerous biotic and abiotic stresses, such as drought, low or high temperature and soil salinization. A variety of genes are induced by these stresses. The products of these genes not only engender functional proteins to resist such stresses, but also to function as signal transduction factors in stress responses. Some research has shown that transcription factors play a vital role in the regulation of gene expression.
Here we developed transcription factors gene family searching tool, and identified 2826 transcription factor genes belonging to 57 gene families among carrot genome using a cut-off E-value e-5.
Transcription factor |
Pfam seed |
Gene Number |
Transcription factor |
Pfam seed |
Gene Number |
ABI3-VP1 |
PF02362.16 |
266 |
AP2-EREBP |
PF00847.15 |
255 |
ARF |
PF06507.8 |
30 |
ARID |
PF01388.16 |
13 |
AS2 |
PF03195.9 |
70 |
AUX-IAA |
PF02309.11 |
82 |
BBR-BPC |
PF06217.7 |
7 |
BES1 |
PF05687.8 |
11 |
bHLH |
PF00010.21 |
147 |
bZIP |
PF00170.16 |
76 |
C2C2-CO-like |
PF06203.9 |
55 |
C2H2 |
PF00096.21 |
21 |
C3H |
PF00642.19 |
54 |
CAMTA |
PF03859.11 |
5 |
CPP |
PF03638.10 |
11 |
Dof |
PF02701.10 |
49 |
E2F-DP |
PF02319.15 |
11 |
EIL |
PF04873.8 |
11 |
FAR1 |
PF03101.10 |
78 |
FHA |
PF00498.21 |
14 |
GARP-ARR-B |
PF00072.19 |
87 |
GATA |
PF00320.22 |
33 |
GIF |
PF05030.7 |
3 |
GRAS |
PF03514.9 |
117 |
GRF |
PF06839.7 |
62 |
GeBP |
PF04504.9 |
16 |
HMG |
PF00505.14 |
20 |
HSF |
PF00447.12 |
35 |
JUMONJI |
PF02373.17 |
35 |
LFY |
PF01698.11 |
3 |
LIM |
PF00412.17 |
23 |
LSD |
PF06943.7 |
7 |
MADS |
PF00319.13 |
81 |
MBF1 |
PF08523.5 |
2 |
MYB |
PF00249.26 |
386 |
NAC |
PF01849.13 |
9 |
NF-X1 |
PF01422.12 |
2 |
NF-YA |
PF02045.10 |
14 |
NF-YB |
PF00808.18 |
59 |
Nin-like |
PF02042.10 |
23 |
PHD |
PF00628.24 |
116 |
PLATZ |
PF04640.9 |
17 |
PcG |
PF00856.23 |
51 |
S1Fa-like |
PF04689.8 |
2 |
SAP |
PF02037.22 |
15 |
SBP |
PF03110.9 |
24 |
SRS |
PF05142.7 |
14 |
TALE |
PF03789.8 |
12 |
TAZ |
PF02135.11 |
14 |
TCP |
PF03634.8 |
55 |
Trihelix |
PF13837.1 |
39 |
Tub |
PF01167.13 |
18 |
WRKY |
PF03106.10 |
105 |
Whirly |
PF08536.6 |
4 |
YABBY |
PF04690.8 |
14 |
ZF-HD |
PF04770.7 |
22 |
ZIM |
PF06200.9 |
21 |
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